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Info • Suillus sp. nov. FC429 v1.0

Status

[March 2020] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus sp. nov. FC429 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.27
Sequencing read coverage depth 154.7x
# of contigs 113
# of scaffolds 113
# of scaffolds >= 2Kbp 113
Scaffold N50 21
Scaffold L50 (Mbp) 0.62
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.38, 1.97, 1.40


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 89833 82685 92.0%
Ests est.fasta 87534099 86613852 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1727 1478
transcript 1408 1194
exon 235 147
intron 66 55
description:
protein length (aa) 408 327
exons per gene 5.99 5
# of gene models 14111


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.