Info • Suillus americanus EM31 v1.0

Status

Assembly v1 (December 2015) is a standard draft assembly, using Illumina gDNAs assembled with AllPathsLG.

Summary statistics for the Suillus americanus EM31 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 50.81
Sequencing read coverage depth 92x
# of contigs 3604
# of scaffolds 1307
# of scaffolds >= 2Kbp 686
Scaffold N50 47
Scaffold L50 (Mbp) 0.30
# of gaps 2297
% of scaffold length in gaps 7.1%
Three largest Scaffolds (Mbp) 1.66, 1.30, 1.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 62497 57441 91.9%
Ests est.fasta 159165372 149469177 93.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1494 1207
transcript 1215 970
exon 227 144
intron 66 55
description:
protein length (aa) 348 269
exons per gene 5.34 4
# of gene models 17163


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lofgren LA, Nguyen NH, Vilgalys R, Ruytinx J, Liao HL, Branco S, Kuo A, LaButti K, Lipzen A, Andreopoulos W, Pangilinan J, Riley R, Hundley H, Na H, Barry K, Grigoriev IV, Stajich JE, Kennedy PG
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.
New Phytol. 2021 Apr;230(2):774-792. doi: 10.1111/nph.17160

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.