Info • Suillus bovinus UH-Sbo-P2 v1.0

Status

[August 2018] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus bovinus UH-Sbo-P2 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 47.50
Sequencing read coverage depth 300.65x
# of contigs 622
# of scaffolds 622
# of scaffolds >= 2Kbp 585
Scaffold N50 42
Scaffold L50 (Mbp) 0.32
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.82, 1.10, 1.09


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 80343 74403 92.6%
Ests est.fasta 173483799 171910383 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1745 1518
transcript 1411 1202
exon 228 144
intron 66 55
description:
protein length (aa) 413 333
exons per gene 6.19 5
# of gene models 13537


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lofgren LA, Nguyen NH, Vilgalys R, Ruytinx J, Liao HL, Branco S, Kuo A, LaButti K, Lipzen A, Andreopoulos W, Pangilinan J, Riley R, Hundley H, Na H, Barry K, Grigoriev IV, Stajich JE, Kennedy PG
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.
New Phytol. 2021 Apr;230(2):774-792. doi: 10.1111/nph.17160

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.