Info • Suillus brevipes v1.0
Please note that this organism is for archival use only. Please see the current Suillus brevipes Sb2 v2.0 site for the latest data and information.


Assembly v1 (November 2012) is a draft assembly of Solexa gDNA reads. A total of 1550 scaffolds and 51.7 Mbp were assembled using AllPathsLG.

Summary statistics for the Suillus brevipes v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 51.71
Sequencing read coverage depth 101.7x
# of contigs 4139
# of scaffolds 1550
# of scaffolds >= 2Kbp 1132
Scaffold N50 83
Scaffold L50 (Mbp) 0.16
# of gaps 2589
% of scaffold length in gaps 4.9%
Three largest Scaffolds (Mbp) 1.03, 0.76, 0.69

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 43321 35302 81.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1363 1019
transcript 1108 843
exon 244 156
intron 74 55
protein length (aa) 327 242
exons per gene 4.54 3
# of gene models 22453

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.