Status
Assembly v2 (May 2013) is an improved draft assembly. Illumina gDNA reads were assembled using AllPathsLG and then patched with PacBio gDNA reads using PBJelly.
Summary statistics for the Suillus brevipes Sb2 v2.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 52.03 |
| Sequencing read coverage depth | 101.7x |
| # of contigs | 2205 |
| # of scaffolds | 1550 |
| # of scaffolds >= 2Kbp | 1132 |
| Scaffold N50 | 84 |
| Scaffold L50 (Mbp) | 0.16 |
| # of gaps | 655 |
| % of scaffold length in gaps | 1.3% |
| Three largest Scaffolds (Mbp) | 1.03, 0.76, 0.69 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 43321 | 40052 | 92.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1405 | 1095 |
| transcript | 1159 | 894 |
| exon | 241 | 155 |
| intron | 67 | 55 |
| description: | ||
| protein length (aa) | 345 | 260 |
| exons per gene | 4.80 | 4 |
| # of gene models | 21458 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Branco S, Gladieux P, Ellison CE, Kuo A, LaButti K, Lipzen A, Grigoriev IV, Liao HL, Vilgalys R, Peay KG, Taylor JW, Bruns TD
Genetic isolation between two recently diverged populations of a symbiotic fungus.
Mol Ecol. 2015 Jun;24(11):2747-58. doi: 10.1111/mec.13132
Branco S, Gladieux P, Ellison CE, Kuo A, LaButti K, Lipzen A, Grigoriev IV, Liao HL, Vilgalys R, Peay KG, Taylor JW, Bruns TD
Genetic isolation between two recently diverged populations of a symbiotic fungus.
Mol Ecol. 2015 Jun;24(11):2747-58. doi: 10.1111/mec.13132
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
