Info • Suillus clintonianus FC179 v1.0

Status

[April 2018] (April 2018) The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was sequenced with PacBio and assembled with Falcon.

Summary statistics for the Suillus clintonianus FC179 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.84
Sequencing read coverage depth 76.3x
# of contigs 288
# of scaffolds 288
# of scaffolds >= 2Kbp 287
Scaffold N50 41
Scaffold L50 (Mbp) 0.31
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.59, 1.08, 0.97


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 87255 77270 88.6%
Ests est.fasta 99544861 96718133 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1769 1529
transcript 1442 1221
exon 237 150
intron 66 55
description:
protein length (aa) 421 339
exons per gene 6.08 5
# of gene models 15530


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.