Info • Suillus decipiens EM49 v1.0

Status

Assembly v1 (August 2015) is a standard draft assembly, using Illumina gDNAs assembled with AllPathsLG.

Summary statistics for the Suillus decipiens EM49 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 62.78
Sequencing read coverage depth 91.3x
# of contigs 3648
# of scaffolds 1391
# of scaffolds >= 2Kbp 873
Scaffold N50 48
Scaffold L50 (Mbp) 0.34
# of gaps 2257
% of scaffold length in gaps 4.6%
Three largest Scaffolds (Mbp) 1.84, 1.72, 1.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47699 44118 92.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1481 1213
transcript 1202 963
exon 226 144
intron 67 55
description:
protein length (aa) 344 263
exons per gene 5.31 4
# of gene models 16894


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.