Info • Suillus discolor FC423 v1.0

Status

[July 2019] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus discolor FC423 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 60.61
Sequencing read coverage depth 139.02x
# of contigs 809
# of scaffolds 809
# of scaffolds >= 2Kbp 808
Scaffold N50 43
Scaffold L50 (Mbp) 0.36
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.87, 1.44, 1.44


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 75989 66527 87.5%
Ests est.fasta 99566457 97092235 97.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1703 1474
transcript 1363 1156
exon 224 144
intron 69 55
description:
protein length (aa) 399 321
exons per gene 6.10 5
# of gene models 16510


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lofgren LA, Nguyen NH, Vilgalys R, Ruytinx J, Liao HL, Branco S, Kuo A, LaButti K, Lipzen A, Andreopoulos W, Pangilinan J, Riley R, Hundley H, Na H, Barry K, Grigoriev IV, Stajich JE, Kennedy PG
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.
New Phytol. 2021 Apr;230(2):774-792. doi: 10.1111/nph.17160

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.