Info • Suillus fuscotomentosus FC203 v1.0

Status

[March 2019] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus fuscotomentosus FC203 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 79.66
Sequencing read coverage depth 365.52x
# of contigs 737
# of scaffolds 737
# of scaffolds >= 2Kbp 736
Scaffold N50 48
Scaffold L50 (Mbp) 0.44
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.81, 1.94, 1.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 78357 70598 90.1%
Ests est.fasta 83926810 81809757 97.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1677 1435
transcript 1349 1140
exon 228 148
intron 69 55
description:
protein length (aa) 400 319
exons per gene 5.92 5
# of gene models 18512


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lofgren LA, Nguyen NH, Vilgalys R, Ruytinx J, Liao HL, Branco S, Kuo A, LaButti K, Lipzen A, Andreopoulos W, Pangilinan J, Riley R, Hundley H, Na H, Barry K, Grigoriev IV, Stajich JE, Kennedy PG
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.
New Phytol. 2021 Apr;230(2):774-792. doi: 10.1111/nph.17160

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.