Info • Suillus hirtellus EM16 v1.0

Status

Assembly v1 (March 2015) is a standard draft assembly, using Illumina gDNAs assembled with AllPathsLG.

Summary statistics for the Suillus hirtellus EM16 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.94
Sequencing read coverage depth 109.5x
# of contigs 1626
# of scaffolds 644
# of scaffolds >= 2Kbp 464
Scaffold N50 36
Scaffold L50 (Mbp) 0.41
# of gaps 982
% of scaffold length in gaps 2.4%
Three largest Scaffolds (Mbp) 1.81, 1.43, 1.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 40763 39513 96.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1577 1333
transcript 1272 1041
exon 226 144
intron 68 55
description:
protein length (aa) 367 290
exons per gene 5.64 4
# of gene models 17067


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.