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Info • Suillus kaibabensis FC96 v2.0

Status

[December 2020] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus kaibabensis FC96 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.97
Sequencing read coverage depth 85.82x
# of contigs 942
# of scaffolds 942
# of scaffolds >= 2Kbp 928
Scaffold N50 59
Scaffold L50 (Mbp) 0.23
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.10, 0.92, 0.89


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 76142 64767 85.1%
Ests est.fasta 174895213 151987745 86.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1723 1477
transcript 1380 1163
exon 226 146
intron 69 55
description:
protein length (aa) 409 329
exons per gene 6.12 5
# of gene models 13919


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.