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Info • Suillus quiescens AUS223 v1.0

Status

The nuclear genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Genome Assembly
Genome Assembly size (Mbp) 34.52
Sequencing read coverage depth 135.97x
# of contigs 32
# of scaffolds 32
# of scaffolds >= 2Kbp 32
Scaffold N50 6
Scaffold L50 (Mbp) 2.73
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.44, 3.16, 2.85


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 69879 66904 95.7%
Ests est.fasta 157381468 156719491 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1854 1617
transcript 1526 1315
exon 241 148
intron 63 55
description:
protein length (aa) 443 357
exons per gene 6.34 5
# of gene models 12072


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.