Info • Suillus luteus UH-Slu-Lm8-n1 v1.0
Please note that this organism is for archival use only. Please see the current Suillus luteus UH-Slu-Lm8-n1 v3.0 site for the latest data and information.


Assembly v1 (September 2012) is a minimal draft assembly of Solexa unpaired-end gDNA reads which were assembled first using Velvet to simulate paired end reads. A total of 1944 scaffolds and 37.0 Mbp were then assembled using AllPathsLG.

Summary statistics for the Suillus luteus UH-Slu-Lm8-n1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 37.01
Sequencing read coverage depth 93.6x
# of contigs 2113
# of scaffolds 1944
# of scaffolds >= 2Kbp 1433
Scaffold N50 165
Scaffold L50 (Mbp) 0.06
# of gaps 169
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.57, 0.44, 0.43

RNAs Data set # sequences total # mapped to genome % mapped to genome
ESTs NCBI_Sanger_ESTs 681 404 59.3%
RNA+EST contigs JGI_Combest_RNA_contigs 161785 143615 88.8%
RNA contigs JGI_Rnnotator_RNA_contigs 43774 37764 86.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1413 1075
transcript 1176 894
exon 245 156
intron 65 55
protein length (aa) 327 237
exons per gene 4.79 3
# of gene models 18316

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.