Info • Suillus luteus UH-Slu-Lm8-n1 v3.0

Status

[June 2017] Assembly v3 (April 2017) is a improved draft assembly of PacBio gDNA reads using Falcon and finisherSC.

Summary statistics for the Suillus luteus UH-Slu-Lm8-n1 v3.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.49
Sequencing read coverage depth 80.09x
# of contigs 67
# of scaffolds 67
# of scaffolds >= 2Kbp 67
Scaffold N50 10
Scaffold L50 (Mbp) 1.39
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.59, 2.96, 2.89


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 209233321 204069871 97.5%
Other JGI_RNA_contigs 43774 41382 94.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1602 1322
transcript 1310 1057
exon 235 150
intron 66 55
description:
protein length (aa) 384 300
exons per gene 5.57 4
# of gene models 16588


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.