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Info • Suillus ochraceoroseus FC498 v1.0

Status

[March 2020] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus ochraceoroseus FC498 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 71.52
Sequencing read coverage depth 92.59x
# of contigs 606
# of scaffolds 606
# of scaffolds >= 2Kbp 605
Scaffold N50 33
Scaffold L50 (Mbp) 0.66
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.05, 1.80, 1.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 82416 65446 79.4%
Ests est.fasta 124739871 121209683 97.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1662 1406
transcript 1334 1110
exon 228 148
intron 70 55
description:
protein length (aa) 394 312
exons per gene 5.84 5
# of gene models 17772


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.