Info • Suillus paluster FC165 v1.0


[August 2018] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus paluster FC165 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 61.99
Sequencing read coverage depth 93.23x
# of contigs 996
# of scaffolds 996
# of scaffolds >= 2Kbp 979
Scaffold N50 48
Scaffold L50 (Mbp) 0.31
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.98, 1.57, 1.51

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 98608 84678 85.9%
Ests est.fasta 220676496 205782810 93.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1671 1415
transcript 1339 1122
exon 225 145
intron 69 55
protein length (aa) 392 313
exons per gene 5.95 5
# of gene models 16585

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.