Info • Suillus placidus DOB743 v1.0

Status

[December 2018] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus placidus DOB743 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 55.32
Sequencing read coverage depth 284.53x
# of contigs 753
# of scaffolds 753
# of scaffolds >= 2Kbp 709
Scaffold N50 36
Scaffold L50 (Mbp) 0.42
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.07, 1.77, 1.67


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 97428 88442 90.8%
Ests est.fasta 75551426 74378494 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1738 1489
transcript 1410 1192
exon 235 149
intron 68 55
description:
protein length (aa) 413 329
exons per gene 5.99 5
# of gene models 15123


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.