Info • Suillus placidus S07 v1.0

Status

[January 2020] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus placidus S07 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.94
Sequencing read coverage depth 276.18x
# of contigs 47
# of scaffolds 47
# of scaffolds >= 2Kbp 47
Scaffold N50 6
Scaffold L50 (Mbp) 3.43
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.68, 4.14, 4.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 111396 102159 91.7%
Ests est.fasta 178121242 177389193 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1757 1502
transcript 1436 1205
exon 240 151
intron 67 55
description:
protein length (aa) 424 339
exons per gene 5.98 5
# of gene models 14550


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.