Info • Suillus plorans S12 v1.0

Status

[January 2020] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus plorans S12 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.86
Sequencing read coverage depth 224.71x
# of contigs 176
# of scaffolds 176
# of scaffolds >= 2Kbp 176
Scaffold N50 31
Scaffold L50 (Mbp) 0.48
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.49, 1.74, 1.25


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 109528 105139 96.0%
Ests est.fasta 153602182 152646856 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1712 1486
transcript 1386 1173
exon 231 146
intron 67 55
description:
protein length (aa) 409 327
exons per gene 6.01 5
# of gene models 16402


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lofgren LA, Nguyen NH, Vilgalys R, Ruytinx J, Liao HL, Branco S, Kuo A, LaButti K, Lipzen A, Andreopoulos W, Pangilinan J, Riley R, Hundley H, Na H, Barry K, Grigoriev IV, Stajich JE, Kennedy PG
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.
New Phytol. 2021 Apr;230(2):774-792. doi: 10.1111/nph.17160

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.