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Info • Suillus pseudogranulatus FC45 v1.0


[February 2020] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus pseudogranulatus FC45 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.29
Sequencing read coverage depth 145.76x
# of contigs 623
# of scaffolds 623
# of scaffolds >= 2Kbp 623
Scaffold N50 50
Scaffold L50 (Mbp) 0.26
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.98, 1.40, 1.25

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 83965 72064 85.8%
Ests est.fasta 86480753 82289447 95.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1747 1499
transcript 1416 1197
exon 228 147
intron 66 55
protein length (aa) 412 330
exons per gene 6.20 5
# of gene models 13672


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.