Info • Suillus pungens FC27 v1.0


[May 2020] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

The transcriptome was contaminated with other fungi, resulting in the somewhat low RNA mapping rate.

Summary statistics for the Suillus pungens FC27 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.63
Sequencing read coverage depth 184.48x
# of contigs 841
# of scaffolds 841
# of scaffolds >= 2Kbp 801
Scaffold N50 144
Scaffold L50 (Mbp) 0.08
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.38, 0.33, 0.29

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 114056 79996 70.1%
Ests est.fasta 158151327 146163245 92.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1764 1535
transcript 1431 1224
exon 233 145
intron 67 55
protein length (aa) 419 339
exons per gene 6.14 5
# of gene models 12148


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.