Info • Suillus quiescens FC198 v1.0


[February 2021] The nuclear genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. Due to limited material, the genome assembly is not complete and thus RNA mapping rate is low. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus quiescens FC198 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 27.11
Sequencing read coverage depth 178.63184406409323x
# of contigs 10748
# of scaffolds 7433
# of scaffolds >= 2Kbp 3453
Scaffold N50 1054
Scaffold L50 (Mbp) 0.01
# of gaps 3315
% of scaffold length in gaps 1.2%
Three largest Scaffolds (Mbp) 0.12, 0.09, 0.07

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 73638 33162 45.0%
Ests est.fasta 159110289 130358580 81.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1381 1144
transcript 1123 937
exon 226 146
intron 67 55
protein length (aa) 330 264
exons per gene 4.97 4
# of gene models 12014


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.