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Info • Suillus quiescens FC197 v1.0

Status

[February 2020] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus quiescens FC197 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.53
Sequencing read coverage depth 381.57x
# of contigs 286
# of scaffolds 286
# of scaffolds >= 2Kbp 286
Scaffold N50 12
Scaffold L50 (Mbp) 1.11
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.55, 2.74, 2.38


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 57263 52896 92.4%
Ests est.fasta 74043897 72266268 97.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1818 1588
transcript 1494 1292
exon 237 151
intron 63 55
description:
protein length (aa) 433 351
exons per gene 6.29 5
# of gene models 12066


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.