Info • Suillus subaureus MN1 v1.0

Status

[September 2017] The Suillus subaureus MN1 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Suillus subaureus MN1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 57.66
Sequencing read coverage depth 64.5x
# of contigs 668
# of scaffolds 668
# of scaffolds >= 2Kbp 664
Scaffold N50 24
Scaffold L50 (Mbp) 0.68
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.65, 2.38, 2.08


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 99593 90807 91.2%
Ests est.fasta 119326693 118401445 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1536 1277
transcript 1232 1005
exon 220 141
intron 68 55
description:
protein length (aa) 360 279
exons per gene 5.60 4
# of gene models 15740


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.