Status
[April 2021] The Suillus luteus 16.09.17.av07 nuclear genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. No transcriptome was available, so the transcriptome of the Suillus subalutaceus FC151 strain was used, accounting for the low RNA mapping. The mitochondrial genome was assembled separately and is available on the Download tab.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 39.23 |
| Sequencing read coverage depth | 86.62x |
| # of contigs | 1574 |
| # of scaffolds | 1460 |
| # of scaffolds >= 2Kbp | 1093 |
| Scaffold N50 | 122 |
| Scaffold L50 (Mbp) | 0.08 |
| # of gaps | 114 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.56, 0.46, 0.45 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 71503297 | 50907015 | 71.2% |
| Other | JGI_RNA_contigs | 73958 | 442 | 0.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1640 | 1380 |
| transcript | 1308 | 1066 |
| exon | 217 | 138 |
| intron | 68 | 55 |
| description: | ||
| protein length (aa) | 423 | 344 |
| exons per gene | 6.01 | 5 |
| # of gene models | 13348 |
Collaborators
- Nhu Nguyen at U. Hawaii at Manoa
- Amanda certano at U. Minnesota
- Brian Looney at Clark U.
- Sara Branco at U.
Colorado Denver
- Hui-Ling Liao at U. Florida
- Peter Kennedy at U. Minnesota
- Rytas Vilgalys at Duke U.
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
