Info • Suillus tomentosus FC115 v1.0

Status

[August 2017] The Suillus tomentosus FC115 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Suillus tomentosus FC115 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 53.06
Sequencing read coverage depth 88.2x
# of contigs 203
# of scaffolds 203
# of scaffolds >= 2Kbp 201
Scaffold N50 33
Scaffold L50 (Mbp) 0.52
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.84, 1.55, 1.29


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 62644 56266 89.8%
Ests est.fasta 95395057 91170826 95.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1635 1379
transcript 1321 1092
exon 227 146
intron 67 55
description:
protein length (aa) 393 313
exons per gene 5.81 5
# of gene models 17198


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lofgren LA, Nguyen NH, Vilgalys R, Ruytinx J, Liao HL, Branco S, Kuo A, LaButti K, Lipzen A, Andreopoulos W, Pangilinan J, Riley R, Hundley H, Na H, Barry K, Grigoriev IV, Stajich JE, Kennedy PG
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi.
New Phytol. 2021 Apr;230(2):774-792. doi: 10.1111/nph.17160

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.