Info • Suillus viscidus S02 v2.0

Status

[September 2020] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Suillus viscidus S02 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 74.73
Sequencing read coverage depth 75.05x
# of contigs 924
# of scaffolds 924
# of scaffolds >= 2Kbp 909
Scaffold N50 146
Scaffold L50 (Mbp) 0.14
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.84, 0.65, 0.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 122918 110359 89.8%
Ests est.fasta 127357681 126818211 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1691 1456
transcript 1366 1146
exon 236 152
intron 70 55
description:
protein length (aa) 407 325
exons per gene 5.78 5
# of gene models 22317


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.