Due to the emerging COVID-19 pandemic, JGI will not be accepting or processing any samples because of reduced onsite staffing until further notice.
Info • Sympodiomyces attinorum NRRL Y-27639 v1.0

Status

[April 2015] The Sympodiomyces attinorum genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
A 20.8kb mitochondrial genome was assembled separately and is available in the download section.

Summary statistics for the Sympodiomyces attinorum NRRL Y-27639 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 14.02
Sequencing read coverage depth 89.3x
# of contigs 66
# of scaffolds 14
# of scaffolds >= 2Kbp 10
Scaffold N50 2
Scaffold L50 (Mbp) 3.66
# of gaps 52
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 3.72, 3.66, 2.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 13627 11081 81.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1502 1280
transcript 1449 1239
exon 974 780
intron 109 68
description:
protein length (aa) 451 379
exons per gene 1.49 1
# of gene models 6184


Collaborators

Joseph Spatafora, Oregon State University, USA
Jon Magnuson, JBEI, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.