Status
December 2012. The genome of Symbiotaphrina kochii CBS 250.77 was sequenced using Illumina technology and assembled with AllPathsLG (version R38143).
Summary statistics for the Symbiotaphrina kochii v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 24.83 |
| Sequencing read coverage depth | 69x |
| # of contigs | 59 |
| # of scaffolds | 54 |
| # of scaffolds >= 2Kbp | 42 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 2.01 |
| # of gaps | 5 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.97, 2.50, 2.26 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator-assembled Illumina ESTs | 29762 | 28939 | 97.2% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1746 | 1536 |
| transcript | 1585 | 1386 |
| exon | 480 | 296 |
| intron | 72 | 57 |
| description: | ||
| protein length (aa) | 453 | 380 |
| exons per gene | 3.30 | 3 |
| # of gene models | 10482 |
Collaborators
- Joey Spatafora, Oregon State University
- Igor Grigoriev, DOE Joint Genome Institute
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
