Info • Syncephalis fuscata S228 v1.0


[January 2017] The Syncephalis fuscata S228 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Syncephalis fuscata S228 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.36
Sequencing read coverage depth 276.18x
# of contigs 371
# of scaffolds 371
# of scaffolds >= 2Kbp 360
Scaffold N50 20
Scaffold L50 (Mbp) 0.47
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.01, 1.00, 0.98

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34680 31381 90.5%
Ests est.fasta 109717016 106193293 96.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1658 1396
transcript 1381 1170
exon 266 154
intron 68 60
protein length (aa) 395 319
exons per gene 5.20 4
# of gene models 8846


Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.