Info • Talaromyces marneffei ATCC 18224

Status

The genome of Talaromyces marneffei was sequenced by JCVI. For more information on the project please see the JCVI Talaromyces marneffei genome project. JGI MycoCosm tools were setup to assist with manual curation and comparative analysis of Penicillium and Aspergillus fungi.

Summary statistics for the Talaromyces marneffei ATCC 18224 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.64
Sequencing read coverage depth 8.8x
# of contigs 524
# of scaffolds 452
# of scaffolds >= 2Kbp 29
Scaffold N50 4
Scaffold L50 (Mbp) 3.34
# of gaps 72
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 6.41, 4.17, 3.75


Gene Models ExternalModels
length (bp) of: average median
gene 1920 1685
transcript 1511 1260
exon 478 249
intron 75 61
description:
protein length (aa) 504 420
exons per gene 3.16 3
# of gene models 10638


Collaborators

William C. Nierman, JCVI

Alex Andrianopoulos, Melbourne University

 

Genome Reference(s)

Funding

This project was not sequenced at the JGI.