Info • Taphrina deformans


The genome sequence and gene prediction of Taphrina deformans were not determined by the JGI, but were recieved from Ousmane Cissé ([email protected]) and have been published (pubmed: 23631913). Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Taphrina deformans PYCC 5710 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 13.36
Sequencing read coverage depth 29.3x
# of contigs 477
# of scaffolds 394
# of scaffolds >= 2Kbp 394
Scaffold N50 61
Scaffold L50 (Mbp) 0.07
# of gaps 83
% of scaffold length in gaps 0.9%
Three largest Scaffolds (Mbp) 0.24, 0.20, 0.19

Gene Models ExternalModels
length (bp) of: average median
gene 1389 1170
transcript 1338 1128
exon 815 592
intron 81 50
protein length (aa) 446 376
exons per gene 1.64 1
# of gene models 4609

Genome Reference(s)


This project was not sequenced at the JGI.