Status
The genome sequence and gene prediction of Taphrina deformans were not determined by the JGI, but were recieved from Ousmane Cissé ([email protected]) and have been published (pubmed: 23631913). Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Taphrina deformans PYCC 5710
v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp} | 13.36 |
Sequencing read coverage depth | 29.3x |
# of contigs | 477 |
# of scaffolds | 394 |
# of scaffolds >= 2Kbp | 394 |
Scaffold N50 | 61 |
Scaffold L50 (Mbp) | 0.07 |
# of gaps | 83 |
% of scaffold length in gaps | 0.9% |
Three largest Scaffolds (Mbp) | 0.24, 0.20, 0.19 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1389 | 1170 |
transcript | 1338 | 1128 |
exon | 815 | 592 |
intron | 81 | 50 |
description: | ||
protein length (aa) | 446 | 376 |
exons per gene | 1.64 | 1 |
# of gene models | 4609 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Cissé OH, Almeida JM, Fonseca A, Kumar AA, Salojärvi J, Overmyer K, Hauser PM, Pagni M
Genome sequencing of the plant pathogen Taphrina deformans, the causal agent of peach leaf curl.
mBio. 2013 Apr 30;4(3):e00055-13. doi: 10.1128/mBio.00055-13
Cissé OH, Almeida JM, Fonseca A, Kumar AA, Salojärvi J, Overmyer K, Hauser PM, Pagni M
Genome sequencing of the plant pathogen Taphrina deformans, the causal agent of peach leaf curl.
mBio. 2013 Apr 30;4(3):e00055-13. doi: 10.1128/mBio.00055-13
Funding
This project was not sequenced at the JGI.