Info • Termitomyces sp. J132

Status

The genome sequence and gene models of Termitomyces sp. J132 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Genome Assembly
Genome Assembly size (Mbp) 67.30
Sequencing read coverage depth
# of contigs 3818
# of scaffolds 2335
# of scaffolds >= 2Kbp 603
Scaffold N50 83
Scaffold L50 (Mbp) 0.27
# of gaps 1483
% of scaffold length in gaps 0.9%
Three largest Scaffolds (Mbp) 0.93, 0.81, 0.76


Gene Models ExternalModels
length (bp) of: average median
gene 1727 1263
transcript 1248 1002
exon 220 140
intron 104 56
description:
protein length (aa) 416 334
exons per gene 5.68 4
# of gene models 11143


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Poulsen M, Hu H, Li C, Chen Z, Xu L, Otani S, Nygaard S, Nobre T, Klaubauf S, Schindler PM, Hauser F, Pan H, Yang Z, Sonnenberg AS, de Beer ZW, Zhang Y, Wingfield MJ, Grimmelikhuijzen CJ, de Vries RP, Korb J, Aanen DK, Wang J, Boomsma JJ, Zhang G
Complementary symbiont contributions to plant decomposition in a fungus-farming termite.
Proc Natl Acad Sci U S A. 2014 Oct 7;111(40):14500-5. doi: 10.1073/pnas.1319718111

Funding

This project was not sequenced at the JGI.