Info • Terfezia boudieri ATCC MYA-4762 v1.1


Assembly v1 (Nov 2013) is an improved draft assembly, derived from Illumina gDNAs using AllPathsLG and improved with PacBio reads using PBJelly.

Annotation v1.1 (Dec 2014) is an improved draft annotation, generated by the JGI Annotation Pipeline using various gene modelers and supporting evidence, including RNA-Seq that was not available for Annotation v1.0.


Summary statistics for the Terfezia boudieri ATCC MYA-4762 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 63.23
Sequencing read coverage depth 104.4x
# of contigs 2078
# of scaffolds 516
# of scaffolds >= 2Kbp 401
Scaffold N50 24
Scaffold L50 (Mbp) 0.78
# of gaps 1562
% of scaffold length in gaps 5.7%
Three largest Scaffolds (Mbp) 2.60, 2.35, 2.11

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests NCBI_ESTs 125 76 60.8%
Other JGI_RNA_contigs 40993 38503 93.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1557 1275
transcript 1379 1092
exon 444 267
intron 87 65
protein length (aa) 388 288
exons per gene 3.10 2
# of gene models 12114

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.