Info • Teratosphaeria nubilosa CBS 116005 v1.0

Status

[Oct 2014] The Teratosphaeria nubilosa genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R46652 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Teratosphaeria nubilosa CBS 116005 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.44
Sequencing read coverage depth 146.3x
# of contigs 320
# of scaffolds 273
# of scaffolds >= 2Kbp 240
Scaffold N50 34
Scaffold L50 (Mbp) 0.24
# of gaps 47
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.12, 0.79, 0.69


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 21806 21000 96.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1632 1384
transcript 1518 1281
exon 695 420
intron 98 61
description:
protein length (aa) 426 344
exons per gene 2.18 2
# of gene models 10998


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.