Info • Thelephora terrestris UH-Tt-Lm1 v1.0

Status

[October 2018] The genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page

Summary statistics for the Thelephora terrestris v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.73
Sequencing read coverage depth 110.29x
# of contigs 76
# of scaffolds 76
# of scaffolds >= 2Kbp 73
Scaffold N50 7
Scaffold L50 (Mbp) 2.11
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.57, 3.46, 2.72


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 72048 69009 95.8%
Ests est.fasta 107889050 107094227 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1815 1576
transcript 1500 1290
exon 264 167
intron 69 57
description:
protein length (aa) 440 367
exons per gene 5.68 5
# of gene models 13338


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.