Info • Thielavia antarctica CBS 123565 v1.0

Status

(April 2014) The genome of Thielavia antarctica was sequenced using Illumina technology and subsequently assembled together with AllPathsLG version R47710, (Gnerre et al., 2010).

Summary statistics for the Thielavia antarctica CBS 123565 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.66
Sequencing read coverage depth 88.1x
# of contigs 1650
# of scaffolds 153
# of scaffolds >= 2Kbp 131
Scaffold N50 9
Scaffold L50 (Mbp) 1.45
# of gaps 1497
% of scaffold length in gaps 3.2%
Three largest Scaffolds (Mbp) 3.90, 3.29, 2.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Assembled_RNAseq_reads 25564 24679 96.5%


Gene Models FilteredModels2
length (bp) of: average median
gene 1775 1486
transcript 1605 1325
exon 592 360
intron 101 67
description:
protein length (aa) 453 358
exons per gene 2.71 2
# of gene models 9204


Collaborators

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.