Status
The Thielavia appendiculata genome was sequenced using Illumina technology and subsequently assembled together with AllPathsLG version R47710, (Gnerre et al., 2010).
Summary statistics for the Thielavia appendiculata CBS
731.68 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.74 |
| Sequencing read coverage depth | 95.3x |
| # of contigs | 501 |
| # of scaffolds | 109 |
| # of scaffolds >= 2Kbp | 93 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 1.69 |
| # of gaps | 392 |
| % of scaffold length in gaps | 1.6% |
| Three largest Scaffolds (Mbp) | 5.06, 3.73, 3.32 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | Assembled_RNAseq_reads | 34116 | 33266 | 97.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1683 | 1394 |
| transcript | 1508 | 1233 |
| exon | 545 | 330 |
| intron | 101 | 67 |
| description: | ||
| protein length (aa) | 426 | 334 |
| exons per gene | 2.77 | 2 |
| # of gene models | 11942 |
Collaborators
- Adrian Tsang, Concordia University, Canada
- Ronald de Vries, Fungal Biodiversity Centre, The Netherlands
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Hensen N, Bonometti L, Westerberg I, Brännström IO, Guillou S, Cros-Aarteil S, Calhoun S, Haridas S, Kuo A, Mondo S, Pangilinan J, Riley R, LaButti K, Andreopoulos B, Lipzen A, Chen C, Yan M, Daum C, Ng V, Clum A, Steindorff A, Ohm RA, Martin F, Silar P, Natvig DO, Lalanne C, Gautier V, Ament-Velásquez SL, Kruys Å, Hutchinson MI, Powell AJ, Barry K, Miller AN, Grigoriev IV, Debuchy R, Gladieux P, Hiltunen Thorén M, Johannesson H
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Mol Phylogenet Evol. 2023 Oct 10;189():107938. doi: 10.1016/j.ympev.2023.107938
Hensen N, Bonometti L, Westerberg I, Brännström IO, Guillou S, Cros-Aarteil S, Calhoun S, Haridas S, Kuo A, Mondo S, Pangilinan J, Riley R, LaButti K, Andreopoulos B, Lipzen A, Chen C, Yan M, Daum C, Ng V, Clum A, Steindorff A, Ohm RA, Martin F, Silar P, Natvig DO, Lalanne C, Gautier V, Ament-Velásquez SL, Kruys Å, Hutchinson MI, Powell AJ, Barry K, Miller AN, Grigoriev IV, Debuchy R, Gladieux P, Hiltunen Thorén M, Johannesson H
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Mol Phylogenet Evol. 2023 Oct 10;189():107938. doi: 10.1016/j.ympev.2023.107938
Links
- Sordariomycetes group page
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
