Info • Thielavia appendiculata CBS 731.68 v1.0

Status

The Thielavia appendiculata genome was sequenced using Illumina technology and subsequently assembled together with AllPathsLG version R47710, (Gnerre et al., 2010).

Summary statistics for the Thielavia appendiculata CBS 731.68 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.74
Sequencing read coverage depth 95.3x
# of contigs 501
# of scaffolds 109
# of scaffolds >= 2Kbp 93
Scaffold N50 6
Scaffold L50 (Mbp) 1.69
# of gaps 392
% of scaffold length in gaps 1.6%
Three largest Scaffolds (Mbp) 5.06, 3.73, 3.32


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Assembled_RNAseq_reads 34116 33266 97.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1683 1394
transcript 1508 1233
exon 545 330
intron 101 67
description:
protein length (aa) 426 334
exons per gene 2.77 2
# of gene models 11942


Collaborators

 

 



Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.