Info • Thielavia arenaria CBS 508.74 v1.0

Status

The Thielavia arenaria genome was sequenced using Illumina technology and subsequently assembled together with AllPathsLG version R47710, (Gnerre et al., 2010).

Summary statistics for the Thielavia arenaria CBS 508.74 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.99
Sequencing read coverage depth 95.8x
# of contigs 354
# of scaffolds 69
# of scaffolds >= 2Kbp 63
Scaffold N50 11
Scaffold L50 (Mbp) 0.82
# of gaps 285
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 2.83, 2.74, 1.57


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Assembled_RNAseq_reads 36187 35882 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1789 1523
transcript 1621 1380
exon 578 354
intron 95 68
description:
protein length (aa) 464 378
exons per gene 2.80 2
# of gene models 10954


Collaborators

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.