Info • Thielavia hyrcaniae CBS 757.83 v1.0

Status

The Thielavia hyrcaniae genome was sequenced using Illumina technology and subsequently assembled together with AllPathsLG version R47710, (Gnerre et al., 2010).

Summary statistics for the Thielavia hyrcaniae CBS 757.83 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.18
Sequencing read coverage depth 88.9x
# of contigs 972
# of scaffolds 251
# of scaffolds >= 2Kbp 218
Scaffold N50 13
Scaffold L50 (Mbp) 0.57
# of gaps 721
% of scaffold length in gaps 3.2%
Three largest Scaffolds (Mbp) 2.85, 2.18, 2.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Assembled_RNAseq_reads 28628 27602 96.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1718 1413
transcript 1544 1256
exon 567 354
intron 103 69
description:
protein length (aa) 439 344
exons per gene 2.73 2
# of gene models 11338


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Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.