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Info • Thielavia terrestris v2.0

Status

v2.0 (December 2010): The Thielavia terrestris NRRL 8126 finished genome sequence assembly v2.0 was built with Arachne assembler from whole genome shotgun and paired end sequencing reads, followed by assembly finishing. The final assembly includes telomere signatures at each end of all six chromosomes. The nuclear genome sequence annotation from this assembly is from the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Thielavia terrestris 2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 36.91
Sequencing read coverage depth Finished
# of contigs 6
# of scaffolds 6
# of scaffolds >= 2Kbp 6
Scaffold N50 2
Scaffold L50 (Mbp) 9.48
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 10.10, 9.48, 4.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 11186 9162 81.9%
Ests Ests 33539 30750 91.7%


Gene Models FilteredModels2
length (bp) of: average median
gene 1906 1649
transcript 1682 1458
exon 589 344
intron 123 75
description:
protein length (aa) 464 381
exons per gene 2.86 2
# of gene models 9813


Collaborators

  • Randy Berka , Novozymes, Inc.
  • Paul Harris , Novozymes, Inc.
  • Scott Baker , Pacific Northwest National Laboratory

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.