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Info • Thozetella sp. PMI_491 v2.0

Status

Assembly v1 (July 2014) is a minimal draft assembly of Illumina gDNA reads. A total of 194 scaffolds and 72.9 Mbp were assembled using first Velvet and then AllPathsLG.

Summary statistics for the Thozetella sp. PMI_491 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 72.86
Sequencing read coverage depth 112.6x
# of contigs 627
# of scaffolds 194
# of scaffolds >= 2Kbp 183
Scaffold N50 28
Scaffold L50 (Mbp) 0.89
# of gaps 433
% of scaffold length in gaps 8.5%
Three largest Scaffolds (Mbp) 3.12, 2.04, 1.70


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 51762 50198 97.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1661 1460
transcript 1487 1306
exon 516 325
intron 95 66
description:
protein length (aa) 431 366
exons per gene 2.88 2
# of gene models 23281


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.