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Info • Penicillium sp. NC0857 v1.0

Status

[January 2019] The genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Penicillium sp. NC0857 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 25.60
Sequencing read coverage depth 457.57x
# of contigs 20
# of scaffolds 20
# of scaffolds >= 2Kbp 20
Scaffold N50 3
Scaffold L50 (Mbp) 4.39
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.18, 5.09, 4.39


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30039 28555 95.1%
Ests est.fasta 82853244 82454318 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1839 1596
transcript 1686 1455
exon 535 309
intron 73 58
description:
protein length (aa) 479 398
exons per gene 3.15 3
# of gene models 9624


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.