Info • Tilletiaria anomala UBC 951 v1.0

Status

Assembly v1 (April 2013) is a standard draft assembly of Solexa gDNA reads. A total of 289 scaffolds and 18.7 Mbp were assembled using AllPathsLG.

Summary statistics for the Tilletiaria anomala UBC 951 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 18.70
Sequencing read coverage depth 25.2x
# of contigs 289
# of scaffolds 289
# of scaffolds >= 2Kbp 253
Scaffold N50 43
Scaffold L50 (Mbp) 0.13
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.46, 0.46, 0.39


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 16108 15307 95.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 2027 1718
transcript 1819 1501
exon 547 321
intron 92 79
description:
protein length (aa) 521 407
exons per gene 3.32 3
# of gene models 6810


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.