Info • Tilletiopsis washingtonensis MCA 4186 v1.0


[Jan 2015] The Tilletiopsis washingtonensis MCA 4186 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Tilletiopsis washingtonensis MCA 4186 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 18.76
Sequencing read coverage depth 84.7x
# of contigs 218
# of scaffolds 38
# of scaffolds >= 2Kbp 32
Scaffold N50 11
Scaffold L50 (Mbp) 0.73
# of gaps 180
% of scaffold length in gaps 0.9%
Three largest Scaffolds (Mbp) 1.09, 1.02, 0.96

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 19127 18749 98.0%

Gene Models FilteredModels1
length (bp) of: average median
gene 2064 1768
transcript 1759 1419
exon 390 215
intron 89 60
protein length (aa) 517 407
exons per gene 4.51 4
# of gene models 7011


Dr. Catherine Aime, Purdue University, IN

Dr. Joseph Spatafora, Oregon State University, USA

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.