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Info • Torpedospora radiata JK5252C v1.0

Status

(May 2015) The Torpedospora radiata JK5252C genome was sequenced using Illumina and assembled using AllPathsLG (Gnerre et al. 2010).

 

Summary statistics for the Torpedospora radiata JK5252C v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.20
Sequencing read coverage depth 93.7
# of contigs 682
# of scaffolds 96
# of scaffolds >= 2Kbp 77
Scaffold N50 10
Scaffold L50 (Mbp) 1.30
# of gaps 586
% of scaffold length in gaps 2.4%
Three largest Scaffolds (Mbp) 3.34, 2.43, 1.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 31302 29336 93.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1670 1375
transcript 1513 1229
exon 571 368
intron 97 66
description:
protein length (aa) 423 327
exons per gene 2.65 2
# of gene models 11634


Collaborators

Derek Johnson, Oregon State University

Joey Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.