Info • Trametes betulina CIRM-BRFM 1801 v1.0

Status

[September 2017] The Trametes betulina CIRM-BRFM 1801 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trametes betulina CIRM-BRFM 1801 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.47
Sequencing read coverage depth 83.79x
# of contigs 115
# of scaffolds 115
# of scaffolds >= 2Kbp 115
Scaffold N50 21
Scaffold L50 (Mbp) 0.56
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.25, 1.39, 1.25


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 58379 56599 97.0%
Ests est.fasta 117821814 117148697 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1787 1537
transcript 1460 1243
exon 254 154
intron 71 59
description:
protein length (aa) 430 354
exons per gene 5.76 5
# of gene models 13239


Collaborators

Eric Record and Marie-Noëlle Rosso, Aix Marseille Université

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.