Info • Trametopsis cervina CIRM-BRFM 1824 v1.0

Status

[May 2015] Trametopsis cervina CIRM-BRFM 1824 v1.0 is a standard draft produced with Illumina reads and assembled with AllPathsLG R49403, (Gnerre et al. 2010).

 

Summary statistics for the Trametopsis cervina CIRM-BRFM 1824 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.82
Sequencing read coverage depth 89
# of contigs 310
# of scaffolds 110
# of scaffolds >= 2Kbp 96
Scaffold N50 10
Scaffold L50 (Mbp) 0.98
# of gaps 200
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 2.69, 1.94, 1.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 37683 37365 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1827 1563
transcript 1512 1281
exon 253 155
intron 65 58
description:
protein length (aa) 428 348
exons per gene 5.97 5
# of gene models 11836


Collaborators

Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.