Info • Trametes cingulata BRFM 1805 v1.0

Status

[Feb 2015] Trametes cingulata BRFM 1805 v1.0 is a standard draft produced with Illumina reads and assembled with AllPathsLG R49403, (Gnerre et al. 2010).

 

Summary statistics for the Trametes cingulata BRFM 1805 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.00
Sequencing read coverage depth 108.3x
# of contigs 625
# of scaffolds 367
# of scaffolds >= 2Kbp 279
Scaffold N50 16
Scaffold L50 (Mbp) 0.68
# of gaps 258
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 2.31, 2.16, 1.79


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 49207 45101 91.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1773 1506
transcript 1462 1235
exon 261 157
intron 70 59
description:
protein length (aa) 411 335
exons per gene 5.59 4
# of gene models 14110


Collaborators

Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.