Info • Trametes gibbosa CIRM-BRFM 1770 v1.0

Status

[November 2016] The Trametes gibbosa CIRM-BRFM 1770 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Trametes gibbosa v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.11
Sequencing read coverage depth 76.67x
# of contigs 103
# of scaffolds 103
# of scaffolds >= 2Kbp 103
Scaffold N50 18
Scaffold L50 (Mbp) 0.58
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.77, 1.62, 1.37


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 65112 62947 96.7%
Ests est.fasta 375057003 372011739 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1809 1528
transcript 1476 1246
exon 252 152
intron 71 59
description:
protein length (aa) 429 349
exons per gene 5.86 5
# of gene models 12038


Collaborators



Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.